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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATP6V1C1, ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1
Sequence ID:NM_001695
Entrez Gene ID:528
Ensembl ID:ENSG00000155097

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 104033329 - 104081793

 Exon Info From UCSC:
NM_001695

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4108687Full LengthBC010960ATPase, H+ transporting, lysosomal 42kDa, V1 subunit C1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001686  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001695 NP_001686 P21283 V-ATPase_C

Related Sequences

 
mRNAGenPeptSwissProt
J05682 AAA36803 P21283
BC010960 AAH10960 P21283
EU832431 ACE86916  
EU832346 ACE87603  
HQ447211 ADQ31698  
AK298617 BAH12829 B7Z593
X69151 CAA48903 P21283

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP6V1C1 NP_001686 M.musculus Atp6v1c1 66335 Gene Info NP_079770 98
R.norvegicus Atp6v1c1 299971   NP_001011992 98
A.gambiae AgaP_AGAP005845 1276512   XP_315870 66
D.melanogaster Vha44 36826   NP_477266 65
A.thaliana DET3 837840   NP_563916 40
S.cerevisiae VMA5 853782   NP_012843 39
N.crassa NCU09897 3874770   XP_958622 38
S.pombe vma5 2543469   NP_593891 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)