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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CLGN, calmegin
Sequence ID:NM_001130675
NM_004362
Entrez Gene ID:1047
Ensembl ID:ENSG00000153132

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q28.3-q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 141309911 - 141348544

 Exon Info From UCSC:
NM_001130675
NM_004362

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4830135Full LengthBC028357calmegin

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004353  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130675 NP_001124147    
NM_004362 NP_004353 O14967 Calreticulin

Related Sequences

 
mRNAGenPeptSwissProt
BC028357 AAH28357 O14967
DQ892100 ABM83026  
DQ895295 ABM86221  
D86322 BAA22590 O14967
AK290819 BAF83508 A8K454
AK093096 BAG52652 O14967
AK299243 BAG61274 B4DRG2
AK302149 BAG63520 B4DXV8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CLGN NP_001124147 R.norvegicus Clgn 685504   NP_001102942 81
M.musculus Clgn 12745 Gene Info NP_034034 80
A.gambiae AgaP_AGAP005032 1274867   XP_001688470 47
D.melanogaster CG9906 32620   NP_573131 47
D.melanogaster CG1924 32180   NP_572788 46
D.melanogaster Cnx99A 44643   NP_001036766 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)