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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SOX18, SRY (sex determining region Y)-box 18
Sequence ID:NM_018419
RefSeqGene ID:NG_008095
Entrez Gene ID:54345
Ensembl ID:ENSG00000203883

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Associated Diseases (from OMIM)

DiseaseOther Genes
HYPOTRICHOSIS-LYMPHEDEMA-TELANGIECTASIA SYNDROME 

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.33Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 62679479 - 62680994

NM_018419 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1612506267908062680314
125117186268051162680978

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5589289Full LengthBC038590SRY (sex determining region Y)-box 18
5751646Full LengthBC111390SRY (sex determining region Y)-box 18
6183010Full LengthBC073971SRY (sex determining region Y)-box 18

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060889  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_018419 NP_060889 P35713 HMG_box

Related Sequences

 
mRNAGenPeptSwissProt
AF270652 AAG48577 P35713
BC038590 AAH38590 P35713
BC073971 AAH73971 P35713
BC111390 AAI11391 P35713
AB033888 BAA94874 P35713
X65664 CAA46615 P35713
AJ243896 CAB95835 P35713

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SOX18 NP_060889 M.musculus Sox18 20672 Gene Info NP_033262 88
R.norvegicus Sox18 311723   NP_001019952 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)