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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RAPGEF3, Rap guanine nucleotide exchange factor (GEF) 3
Sequence ID:NM_001098531
NM_001098532
NM_006105
Entrez Gene ID:10411
Ensembl ID:ENSG00000079337

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 48131349 - 48151741

 Exon Info From UCSC:
NM_001098531
NM_001098532
NM_006105

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4414360Full LengthBC017728Rap guanine nucleotide exchange factor (GEF) 3
6181000Full LengthBC092404Rap guanine nucleotide exchange factor (GEF) 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006096  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001098531 NP_001092001    
NM_001098532 NP_001092002    
NM_006105 NP_006096 O95398 cNMP_binding
DEP
RasGEF
RasGEF_N

Related Sequences

 
mRNAGenPeptSwissProt
U79275 AAB50216 Q99777
AF103905 AAC83381 O95398
U78169 AAD02890 O95398
U78168 AAD12740 O95398
BC017728 AAH17728 O95398
BC092404 AAH92404 Q569L6
DQ891561 ABM82487  
DQ894748 ABM85674  
AK290230 BAF82919 A8K2G5
AK055502 BAG51527 B3KP15
AK125545 BAG54212 B3KWQ0
AK299029 BAH12932 B7Z5J6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RAPGEF3 NP_001092001 R.norvegicus Rapgef3 59326   NP_067722 91
M.musculus Rapgef3 223864 Gene Info NP_001171281 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)