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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. NFYB, Nuclear transcription factor Y, beta
Sequence ID:NM_006166
Entrez Gene ID:4801
Ensembl ID:ENSG00000120837

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 104513214 - 104531972

NM_006166 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
12690104510857104513546
26912770104514177104514256
27712852104515017104515098
28533050104517003104517200
30513181104519891104520021
31823275104522201104522294
32763360104529225104529309
33613482104531918104532039

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3680937Full LengthBC005316nuclear transcription factor Y, beta
3996244Full LengthBC007035nuclear transcription factor Y, beta
3997299Full LengthBC005317nuclear transcription factor Y, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006157  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006166 NP_006157 P25208 CBFD_NFYB_HMF

Related Sequences

 
mRNAGenPeptSwissProt
L06145 AAA59930 P25208
BC005316 AAH05316 P25208
BC005317 AAH05317 P25208
BC007035 AAH07035 P25208
DQ893304 ABM84230  
DQ896477 ABM87476  
AK291934 BAF84623 P25208
X59710 CAA42230 P25208

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens NFYB NP_006157 M.musculus Nfyb 18045 Gene Info NP_035044 99
R.norvegicus Nfyb 25336   NP_113741 99
N.crassa NCU09248 3880832   XP_964683 69
S.pombe php3 2542027   NP_593639 69
A.thaliana NF-YB3 827101   NP_193190 67
A.gambiae AgaP_AGAP008344 1277639   XP_317114 62
S.cerevisiae HAP3 852260   NP_009532 58
D.melanogaster Nf-YB 35261   NP_609997 56

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta