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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PITX1, paired-like homeodomain 1
Sequence ID:NM_002653
RefSeqGene ID:NG_012114
Entrez Gene ID:5307
Ensembl ID:ENSG00000069011

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 134364263 - 134369913

NM_002653 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
21588134363424134365010
15891821134366965134367197
18222383134369402134369963

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3452956Full LengthBC003685paired-like homeodomain 1
3622592Full LengthBC009412paired-like homeodomain 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002644  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002653 NP_002644 P78337 Homeobox
OAR

Related Sequences

 
mRNAGenPeptSwissProt
U70370 AAC51126 P78337
BC003685 AAH03685 P78337
BC009412 AAH09412 P78337
EU446647 ABZ92176  
JF432432 ADZ15649  
AK290635 BAF83324 P78337

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PITX1 NP_002644 M.musculus Pitx1 18740 Gene Info NP_035227 97
R.norvegicus Pitx1 113983   NP_446076 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)