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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SNRPB, small nuclear ribonucleoprotein polypeptides B and B1
Sequence ID:NM_003091
NM_198216
Entrez Gene ID:6628
Ensembl ID:ENSG00000125835

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 2442735 - 2451431

 Exon Info From UCSC:
NM_003091
NM_198216

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822685Full LengthBC080516small nuclear ribonucleoprotein polypeptides B and B1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_937859  NP_003082  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003091 NP_003082 Q66K91 LSM
NM_198216 NP_937859 P14678 LSM

Related Sequences

 
mRNAGenPeptSwissProt
M34081 AAA36578 P14678
M34082 AAA36579 P14678
J04564 AAA60151 Q15182
BC080516 AAH80516 Q66K91
AY742712 AAU89981 Q5XPV6
HQ447543 ADQ32029  
AK312620 BAG35506 Q66K91
AK301034 BAG62648 B4DVD6
AK301206 BAG62782 B4DVS0
X15893 CAA33902 P14678
Q66K91
X17567 CAB57867 P14678
Q66K91
X17568 CAB57868 P14678
CR456969 CAG33250 P14678

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SNRPB NP_937859 M.musculus Snrpb 20638 Gene Info NP_033251 100
R.norvegicus Snrpb 171365   NP_599185 100
A.gambiae AgaP_AGAP005523 1276207   XP_315523 67
D.melanogaster SmB 34426   NP_001188780 67
A.thaliana smB 827792   NP_001154258 60
A.thaliana AT5G44500 834477   NP_001032011 59
S.pombe smb1 2542684   NP_594151 55
N.crassa NCU02508 3881789   XP_965639 51

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta