Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HCFC1, host cell factor C1 (VP16-accessory protein)
Sequence ID:NM_005334
RefSeqGene ID:NG_012513
Entrez Gene ID:3054
Ensembl ID:ENSG00000172534

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
MENTAL RETARDATION, X-LINKED 3GDI1
GDI1

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 153213007 - 153218158

 Exon Info From UCSC:
NM_005334

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5142023IncompleteBC019887host cell factor C1 (VP16-accessory protein)
5242489IncompleteBC030560host cell factor C1 (VP16-accessory protein)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005325  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_005334 NP_005325 P51610 fn3
Kelch_1
WCCH
Kelch_2

Related Sequences

 
mRNAGenPeptSwissProt
BC019887 AAH19887 Q05C05
BC030560 AAH30560 Q05C05
BC063435 AAH63435 P51610
GU014839 ACX32326  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HCFC1 NP_005325 M.musculus Hcfc1 15161 Gene Info NP_032250 95
R.norvegicus Hcfc1 363519   NP_001132979 95
C.elegans hcf-1 177560   NP_501279 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)