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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HOXD1, Homeobox D1
Sequence ID:NM_024501
Entrez Gene ID:3231
Ensembl ID:ENSG00000128645

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q31.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 177053306 - 177055635

NM_024501 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1879177053306177054184
8801975177054539177055634

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4869019Full LengthBC014477homeobox D1
5171360IncompleteBC028190homeobox D1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_078777  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_024501 NP_078777 Q9GZZ0 Homeobox

Related Sequences

 
mRNAGenPeptSwissProt
AF241528 AAG44444 Q9GZZ0
BC014477 AAH14477 Q96CA4
BC028190 AAH28190 Q8IZ25
DQ892237 ABM83163  
DQ895437 ABM86363  
AK314120 BAG36811 Q9GZZ0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HOXD1 NP_078777 R.norvegicus Hoxd1 288151   NP_001099354 84
M.musculus Hoxd1 15429 Gene Info NP_034597 83

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)