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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. MYD88, myeloid differentiation primary response 88
Sequence ID:NM_001172566
NM_001172567
NM_001172568
NM_001172569
NM_002468
RefSeqGene ID:NG_016964
Entrez Gene ID:4615
Ensembl ID:ENSG00000172936

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 38180191 - 38182777

 Exon Info From UCSC:
NM_001172566
NM_001172567
NM_001172568
NM_001172569
NM_002468

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3900951Full LengthBC013589myeloid differentiation primary response gene (88)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002459  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001172566 NP_001166037    
NM_001172567 NP_001166038    
NM_001172568 NP_001166039    
NM_001172569 NP_001166040    
NM_002468 NP_002459 Q99836 Death
TIR

Related Sequences

 
mRNAGenPeptSwissProt
U70451 AAB49967 Q99836
U84408 AAC50954 Q99836
BC013589 AAH13589 Q99836
BT007376 AAP36040 Q99836
EU832045 ACE86707  
EU831951 ACE87392  
AB446470 BAG55247 Q99836
AK296570 BAG59190 Q99836
AK296716 BAG59306 B4DKU4
AK298650 BAG60822 Q99836
AK298666 BAG60834 Q99836
AK300051 BAG61860 B4DT48
AK300448 BAG62170 B4DU08
AK304676 BAG65448 B4E3D6

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens MYD88 NP_001166038 M.musculus Myd88 17874 Gene Info NP_034981 82
R.norvegicus Myd88 301059   NP_937763 81
A.gambiae MYD 1274965   XP_314167 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta