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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. BGN, biglycan
Sequence ID:NM_001711
RefSeqGene ID:NG_015961
Entrez Gene ID:633
Ensembl ID:ENSG00000182492

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xq28Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 152760438 - 152775004

NM_001711 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1225152760346152760570
226474152770078152770326
475587152770695152770807
588801152771320152771533
802912152771986152772096
9131006152772287152772380
10071145152772504152772642
11462444152773705152775003

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3162633Full LengthBC002416biglycan
3503374Full LengthBC004244biglycan

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001702  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001711 NP_001702 P21810 LRR_1
LRRNT

Related Sequences

 
mRNAGenPeptSwissProt
J04599 AAA36009 P21810
U11686 AAC50117 P21810
BC002416 AAH02416 P21810
BC004244 AAH04244 P21810
BT007323 AAP35987 P21810
DQ891898 ABM82824  
DQ895084 ABM86010  
AK092954 BAC04007 Q8NAB7
AK222484 BAD96204 Q53HU6
AK223302 BAD97022 Q53FI4
AK291955 BAF84644 A8K7E0
AK093023 BAG52637 B3KS75
AK094059 BAG52806 A6NLG9
AK293268 BAG56798 B4DDN7
AK293289 BAG56813 B4DDQ2
AK297966 BAG60276 B4DNL4
AK298756 BAG60898 B4DQD6
AM392603 CAL37481  
AM393683 CAL38559 P21810

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens BGN NP_001702 M.musculus Bgn 12111 Gene Info NP_031568 96
R.norvegicus Bgn 25181   NP_058783 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta