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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ECM1, extracellular matrix protein 1
Sequence ID:NM_001202858
NM_004425
NM_022664
RefSeqGene ID:NG_012062
Entrez Gene ID:1893
Ensembl ID:ENSG00000143369

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Associated Diseases (from OMIM)

DiseaseOther Genes
LIPOID PROTEINOSIS 

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 150480551 - 150486030

 Exon Info From UCSC:
NM_004425
NM_022664

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3614195Full LengthBC023505extracellular matrix protein 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_073155  NP_004416  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001202858 NP_001189787    
NM_004425 NP_004416 Q16610 ECM1
NM_022664 NP_073155   ECM1

Related Sequences

 
mRNAGenPeptSwissProt
U65932 AAB05933 Q16610
U68186 AAB88081 Q16610
U68187 AAB88082 Q16610
BC023505 AAH23505 Q16610
DQ893011 ABM83937  
DQ896257 ABM87256  
AK292435 BAF85124 Q16610
AK097046 BAG53412 Q16610
AK301369 BAG62911 Q16610
AK302279 BAG63622 Q16610
AK316390 BAH14761 B7ZAS5

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ECM1 NP_004416 R.norvegicus Ecm1 116662   NP_446334 71
M.musculus Ecm1 13601 Gene Info NP_031925 70

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)