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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPS20, ribosomal protein S20
Sequence ID:NM_001023
NM_001146227
Entrez Gene ID:6224
Ensembl ID:ENSG00000008988

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:8q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:8: 56985614 - 56987065

 Exon Info From UCSC:
NM_001023
NM_001146227

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3029762Full LengthBC007507ribosomal protein S20
30386230Full LengthBC087850ribosomal protein S20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_001014  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001023 NP_001014 P60866 Ribosomal_S10
NM_001146227 NP_001139699    

Related Sequences

 
mRNAGenPeptSwissProt
L06498 AAA60286 P60866
BC007507 AAH07507 P60866
BC087850 AAH87850 P60866
DQ893212 ABM84138  
DQ896541 ABM87540  
D28358 BAA05724  
AK311808 BAG34751 P60866
AK301342 BAG62890 P60866

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPS20 NP_001014 R.norvegicus LOC100360290 100360290   XP_002728021 97
A.gambiae AgaP_AGAP010591 1275318   XP_314556 83
D.melanogaster RpS20 42464   NP_524421 82
S.pombe rps20 2539449   NP_588436 81
C.elegans rps-20 173309   NP_740944 80
A.thaliana AT3G47370 823891   NP_001030826 74
A.thaliana AT5G62300 836351   NP_001078781 74
A.thaliana AT3G45030 823638   NP_190089 74
N.crassa NCU06892 3875411   XP_959239 72
P.falciparum PF10_0038 810196   XP_001347323 67
S.cerevisiae RPS20 856371   NP_011848 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)