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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYPL1, Synaptophysin-like 1
Sequence ID:NM_006754
NM_182715
Entrez Gene ID:6856
Ensembl ID:ENSG00000008282

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:7q22.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:7: 105730957 - 105735528

 Exon Info From UCSC:
NM_006754
NM_182715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3883697Full LengthBC016835synaptophysin-like 1
4282246Full LengthBC020938synaptophysin-like 1
5171714Full LengthBC061887synaptophysin-like 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_874384  NP_006745  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006754 NP_006745 Q16563 MARVEL
NM_182715 NP_874384   MARVEL

Related Sequences

 
mRNAGenPeptSwissProt
S72481 AAB31344 Q16563
BC016835 AAH16835 Q16563
BC020938 AAH20938 Q16563
BC061887 AAH61887 Q16563
EU831889 ACE86648  
EU831812 ACE87330  
HQ448071 ADQ32552  
AK292230 BAF84919 A8K865
X68194 CAA48276 Q16563

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYPL1 NP_006745 R.norvegicus Sypl1 366595   NP_001014285 83
M.musculus Sypl 19027 Gene Info NP_038663 82

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)