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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SYT4, synaptotagmin IV
Sequence ID:NM_020783
Entrez Gene ID:6860
Ensembl ID:ENSG00000132872

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:18q12.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 40847858 - 40857432

NM_020783 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1827724084785840850612
277328934085167640851796
289437084085354440854358
370941114085721240857614

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5260337Full LengthBC036538synaptotagmin IV

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_065834  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_020783 NP_065834 Q9H2B2 C2

Related Sequences

 
mRNAGenPeptSwissProt
AF299075 AAG37229 Q9H2B2
BC036538 AAH36538 Q9H2B2
EU176218 ABW03669  
AB037763 BAA92580 Q9H2B2
AK291154 BAF83843 A8K539
AK293791 BAG57204 B4DEU3
AK297275 BAG59747 B4DM35
AK297379 BAG59821 B4DMA9
AK299593 BAG61525 B4DS63
AK299652 BAG61571 B4DSA9

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SYT4 NP_065834 R.norvegicus Syt4 64440   NP_113881 90
M.musculus Syt4 20983 Gene Info NP_033334 90

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)