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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM5D, Lysine (K)-specific demethylase 5D
Sequence ID:NM_001146705
NM_004653
NM_001146706
RefSeqGene ID:NG_032920
Entrez Gene ID:8284
Ensembl ID:ENSG00000012817

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:Yq11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:Y: 21867373 - 21877562

 Exon Info From UCSC:
NM_001146705
NM_004653
NM_001146706

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
9007211Full LengthBC146767jumonji, AT rich interactive domain 1D
9052622Full LengthBC144102jumonji, AT rich interactive domain 1D
40146743Full LengthBC132721jumonji, AT rich interactive domain 1D

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004644  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001146705 NP_001140177    
NM_001146706 NP_001140178    
NM_004653 NP_004644 Q9BY66 PHD
ARID
JmjC
JmjN
zf-C5HC2
PLU-1

Related Sequences

 
mRNAGenPeptSwissProt
U52191 AAC50806 Q9BY66
U52365 AAC51135 Q9BY66
BC132721 AAI32722 Q9BY66
BC144102 AAI44103 Q9BY66
BC146767 AAI46768 Q9BY66
D87072 BAA13241 Q9BY66
AK127269 BAG54468 B3KXF6
AK304027 BAG64942 B4E1Y0

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM5D NP_001140177 M.musculus Kdm5d 20592 Gene Info NP_035549 81
S.pombe jmj2 2543275   NP_593492 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)