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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RUFY3, RUN and FYVE domain containing 3
Sequence ID:NM_001037442
NM_001130709
NM_014961
Entrez Gene ID:22902
Ensembl ID:ENSG00000018189

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, brain, cartilage, cerebellum, cerebrum, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q13.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 71587753 - 71659273

 Exon Info From UCSC:
NM_001037442
NM_001130709
NM_014961

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5265230Full LengthBC051716RUN and FYVE domain containing 3
4859348IncompleteBC098433RUN and FYVE domain containing 3
4863516IncompleteBC071988RUN and FYVE domain containing 3
4871393IncompleteBC053837RUN and FYVE domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055776  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001037442 NP_001032519    
NM_001130709 NP_001124181    
NM_014961 NP_055776 Q7L099 RUN

Related Sequences

 
mRNAGenPeptSwissProt
AF112221 AAF17208 Q7L099
BC051716 AAH51716 Q7L099
EU446780 ABZ92309  
AB020678 BAA74894 Q7L099
AK000911 BAG50837 Q7L099
AK294421 BAG57670 B4DG59
AK296501 BAG59134 B4DKC2
AK302637 BAG63879 Q7L099

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RUFY3 NP_001032519 M.musculus Rufy3 52822 Gene Info NP_081806 99
R.norvegicus Rufy3 360921   NP_001020298 99
A.gambiae AgaP_AGAP003431 1272804   XP_558879 52

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)