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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SMARCD1, SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1
Sequence ID:NM_003076
NM_139071
Entrez Gene ID:6602
Ensembl ID:ENSG00000066117

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12q13-q14Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 50479194 - 50494026

 Exon Info From UCSC:
NM_003076
NM_139071

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4110499Full LengthBC009368SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620710  NP_003067  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003076 NP_003067 Q96GM5 SWIB
NM_139071 NP_620710   SWIB

Related Sequences

 
mRNAGenPeptSwissProt
U66617 AAC50695 Q96GM5
AF109733 AAD23390 Q96GM5
BC009368 AAH09368 Q96GM5
EU447009 ABZ92538 Q96GM5
AK292700 BAF85389 A8K9I5
AK293932 BAG57311 B4DF50

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SMARCD1 NP_003067 R.norvegicus Smarcd1 363002   NP_001102222 100
M.musculus Smarcd1 83797 Gene Info NP_114030 99
A.gambiae AgaP_AGAP000923 1270431   XP_309104 70
A.thaliana CHC1 831267   NP_196921 37
A.thaliana AT3G01890 820093   NP_566154 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta