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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TCF21, transcription factor 21
Sequence ID:NM_003206
NM_198392
RefSeqGene ID:NG_032121
Entrez Gene ID:6943
Ensembl ID:ENSG00000118526

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:6q23-q24Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 134210275 - 134213393

 Exon Info From UCSC:
NM_003206
NM_198392

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5221575Full LengthBC025697transcription factor 21

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_938206  NP_003197  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003206 NP_003197 O43680 HLH
NM_198392 NP_938206 O43680 HLH

Related Sequences

 
mRNAGenPeptSwissProt
AF035718 AAC62514 O43680
AF047419 AAC62532 O43680
BC025697 AAH25697 O43680
BT019660 AAV38466 O43680
EU176523 ABW03324  
EU176222 ABW03673  
CR450293 CAG29289 O43680

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TCF21 NP_938206 R.norvegicus Tcf21 252856   NP_001027569 97
M.musculus Tcf21 21412 Gene Info NP_035675 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)