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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.

Gene Info

Gene Information For:Hs. USP9X, Ubiquitin specific peptidase 9, X-linked
Sequence ID:NM_001039590
RefSeqGene ID:NG_012547
Entrez Gene ID:8239
Ensembl ID:ENSG00000124486

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Xp11.4Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:X: 41057780 - 41091850

 Exon Info From UCSC:

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069123Full LengthBC172429ubiquitin specific peptidase 9, X-linked
4538919IncompleteBC063645ubiquitin specific peptidase 9, X-linked
6175281IncompleteBC046205ubiquitin specific peptidase 9, X-linked

Protein Infomation

NM_001039590 NP_001034679 Q93008 EC  
NM_001039591 NP_001034680      

Related Sequences

AF070645 AAC25395 Q93008 EC
BC046205 AAH46205 Q86X58  
BC063645 AAH63645 Q6P468  
BC172429 AAI72429    
AB209666 BAD92903 Q59EZ5  
AK294828 BAG57940 B4DGX9  
X98296 CAA66942 Q93008 EC

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene Info Protein
H.sapiens USP9X NP_001034679 R.norvegicus Usp9x 363445   NP_001129395 99
M.musculus Usp9x 22284 Gene Info NP_033507 98
D.melanogaster faf 43749   NP_524612 52
A.gambiae AgaP_AGAP010088 1279518   XP_319246 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)