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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. HMGN3, high mobility group nucleosomal binding domain 3
Sequence ID:NM_001201362
NM_001201363
NM_004242
NM_138730
RefSeqGene ID:NG_029598
Entrez Gene ID:9324
Ensembl ID:ENSG00000118418

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:6q14.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:6: 79910965 - 79944373

 Exon Info From UCSC:
NM_004242
NM_138730

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3890883Full LengthBC009529high mobility group nucleosomal binding domain 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_620058  NP_004233  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001201362 NP_001188291    
NM_001201363 NP_001188292    
NM_004242 NP_004233 Q15651 HMG14_17
NM_138730 NP_620058   HMG14_17

Related Sequences

 
mRNAGenPeptSwissProt
L40357 AAA73877 Q15651
BC009529 AAH09529 Q15651
AF274949 AAK07526 Q15651
AY043282 AAK85736 Q15651
AF401520 AAK92012 Q15651
AK315391 BAG37784 Q15651
BX648085 CAI46267 Q15651
BK000003 DAA00392 Q15651
BK000006 DAA00395 Q15651

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)