Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PTAFR, Platelet-activating factor receptor
Sequence ID:NM_001164723
NM_000952
NM_001164721
NM_001164722
RefSeqGene ID:NG_029815
Entrez Gene ID:5724
Ensembl ID:ENSG00000169403

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1p35-p34.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 28476235 - 28503201

 Exon Info From UCSC:
NM_001164723
NM_000952
NM_001164721
NM_001164722

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4343214Full LengthBC013816platelet-activating factor receptor
5176867Full LengthBC063000platelet-activating factor receptor

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000943  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_000952 NP_000943 P25105 7tm_1
NM_001164721 NP_001158193    
NM_001164722 NP_001158194    
NM_001164723 NP_001158195    

Related Sequences

 
mRNAGenPeptSwissProt
M80436 AAA60001 P25105
M76674 AAA60002 P25105
L07334 AAA60108 P25105
S52624 AAB24695 P25105
BC013816 AAH13816 P25105
BC063000 AAH63000 P25105
AY275466 AAP32298 P25105
BT009801 AAP88803 P25105
DQ891716 ABM82642  
DQ894893 ABM85819  
EU832802 ACE87813  
GQ129382 ACT64516  
D10202 BAA01050 P25105
D31736 BAA06537  
AK290240 BAF82929 P25105
AK292053 BAF84742 A8K7N8
AK313174 BAG35991 B2R7Z4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PTAFR NP_001158195 M.musculus Ptafr 19204 Gene Info NP_001074680 82
R.norvegicus Ptafr 58949   NP_445773 79

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)