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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. USP4, ubiquitin specific peptidase 4 (proto-oncogene)
Sequence ID:NM_001251877
NM_003363
NM_199443
RefSeqGene ID:NG_030370
Entrez Gene ID:7375
Ensembl ID:ENSG00000114316

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3p21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 49315562 - 49377460

 Exon Info From UCSC:
NM_003363
NM_199443

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
40119090Full LengthBC125130ubiquitin specific peptidase 4 (proto-oncogene)
40119091Full LengthBC125131ubiquitin specific peptidase 4 (proto-oncogene)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_955475  NP_003354  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001251877 NP_001238806      
NM_003363 NP_003354 Q13107 EC 3.4.19.12 UCH
DUF1055
NM_199443 NP_955475     UCH
DUF1055

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
U20657 AAB72237 Q13107 EC 3.4.19.12
AF017305 AAC27355 Q13107 EC 3.4.19.12
AF017306 AAC27356 Q13107 EC 3.4.19.12
BC125130 AAI25131 Q13107 EC 3.4.19.12
BC125131 AAI25132 Q08AK7  
AK222725 BAD96445 Q53H56  
AK223292 BAD97012 Q53FJ3  
AK291795 BAF84484 Q13107 EC 3.4.19.12

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USP4 NP_003354 M.musculus Usp4 22258 Gene Info NP_035808 91
R.norvegicus Usp4 290864   NP_001128484 90
S.pombe ubp12 2538990   NP_588530 40
A.thaliana UBP5 818691   NP_565944 38
N.crassa NCU00480 3872312   XP_956165 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)