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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CXCL9, chemokine (C-X-C motif) ligand 9
Sequence ID:NM_002416
Entrez Gene ID:4283
Ensembl ID:ENSG00000138755

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 76924750 - 76928662

NM_002416 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
122307692262276924851
223123157692596176926045
231624427692730076927426
244325457692853876928640

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30336410Full LengthBC095396chemokine (C-X-C motif) ligand 9
30370826Full LengthBC063122chemokine (C-X-C motif) ligand 9
5228247IncompleteBC042178chemokine (C-X-C motif) ligand 9

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002407  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_002416 NP_002407 Q07325 IL8

Related Sequences

 
mRNAGenPeptSwissProt
BC063122 AAH63122 Q07325
BC095396 AAH95396 Q07325
HQ447615 ADQ32101  
AK311852 BAG34794 B2R4J7
X72755 CAA51284 Q07325

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CXCL9 NP_002407 M.musculus Cxcl9 17329 Gene Info NP_032625 72
R.norvegicus Cxcl9 246759   NP_663705 66

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)