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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PSMB6, proteasome (prosome, macropain) subunit, beta type, 6
Sequence ID:NM_001270481
NM_002798
Entrez Gene ID:5694
Ensembl ID:ENSG00000142507

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 4699475 - 4701717

Transcript StartTranscript EndChromosomal Start Chromosomal End
113546994564699590
13620347000224700089
20433547007324700863
33646547009764701105
46661047013034701447
61182447015744701787

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3456009Full LengthBC000835proteasome (prosome, macropain) subunit, beta type, 6

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_002789  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001270481 NP_001257410      
NM_002798 NP_002789 Q6IAT9
P28072
EC 3.4.25.1 Proteasome

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC000835 AAH00835 Q6IAT9
P28072
EC 3.4.25.1
BT009809 AAP88811 Q6IAT9
P28072
EC 3.4.25.1
DQ891216 ABM82142    
DQ894399 ABM85325    
D29012 BAA06098 P28072 EC 3.4.25.1
AK311768 BAG34711 Q6IAT9  
X61971 CAA43963 P28072 EC 3.4.25.1
CR457065 CAG33346 Q6IAT9
P28072
EC 3.4.25.1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PSMB6 NP_002789 M.musculus Psmb6 19175 Gene Info NP_032972 94
R.norvegicus Psmb6 29666   NP_476440 93
R.norvegicus LOC100360846 100360846   XP_002729074 93
A.gambiae AgaP_AGAP009271 1280236   XP_320065 64
N.crassa NCU09290 3874289   XP_958142 58
D.melanogaster Prosbeta1 46058   NP_652031 57
S.cerevisiae PRE3 853456   NP_012533 56
S.pombe pre3 2540878   NP_596295 55
A.thaliana PBA1 829257   NP_001031759 50
C.elegans pbs-1 176978   NP_500125 45

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta