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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ECHS1, enoyl CoA hydratase, short chain, 1, mitochondrial
Sequence ID:NM_004092
Entrez Gene ID:1892
Ensembl ID:ENSG00000127884

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:10q26.2-q26.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:10: 135175986 - 135186851

NM_004092 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
23472135175987135176436
473540135178161135178228
541660135179479135179598
661765135180392135180496
766865135182426135182525
866993135183407135183534
9941191135184063135184260
11921350135186749135186907

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2907059Full LengthBC008906enoyl Coenzyme A hydratase, short chain, 1, mitochondrial

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_004092 NP_004083 P30084 EC 4.2.1.17  

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC008906 AAH08906 P30084 EC 4.2.1.17
BT007123 AAP35787 P30084 EC 4.2.1.17
D13900 BAA03001 P30084 EC 4.2.1.17

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ECHS1 NP_004083 M.musculus Echs1 93747 Gene Info NP_444349 88
R.norvegicus Echs1 140547   NP_511178 87
C.elegans ech-6 176376   NP_499156 61
A.gambiae AgaP_AGAP011833 1280816   XP_320683 59
D.melanogaster CG6543 36536   NP_610910 57
N.crassa NCU06448 3873508   XP_957339 50

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)