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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. KDM5A, lysine (K)-specific demethylase 5A
Sequence ID:NM_001042603
NM_005056
Entrez Gene ID:5927
Ensembl ID:ENSG00000073614

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:12p11Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:12: 392987 - 498469


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100069227Full LengthBC172533jumonji, AT rich interactive domain 1A
4525199IncompleteBC110916jumonji, AT rich interactive domain 1A
5551045IncompleteBC048307jumonji, AT rich interactive domain 1A
6144764IncompleteBC053893jumonji, AT rich interactive domain 1A
100063039BC156461jumonji, AT rich interactive domain 1A

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042603 NP_001036068 P29375  

Related Sequences

 
mRNAGenPeptSwissProt
S66431 AAB28544 P29375
BC048307 AAH48307 P29375
BC053893 AAH53893 P29375
BC110916 AAI10917 P29375
BC156461 AAI56462  
BC172533 AAI72533  
AB209999 BAE06081 P29375
AK301150 BAG62741 B4DVM9
AK301273 BAG62835 B4DVX3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens KDM5A NP_001036068 M.musculus Kdm5a 214899 Gene Info NP_666109 97
R.norvegicus Jarid1a 312678   XP_002729471 97
A.gambiae AgaP_AGAP004854 1275113   XP_314337 51
D.melanogaster lid 33837   NP_523486 46

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)