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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TNFAIP1, tumor necrosis factor, alpha-induced protein 1 (endothelial)
Sequence ID:NM_021137
Entrez Gene ID:7126
Ensembl ID:ENSG00000109079

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q22-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 26662786 - 26672281

NM_021137 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
13352666254726662881
3366542666643326666751
6558242666733426667503
8259142666826226668351
9159672666842926668481
96811632666927226669467
116438072667138926674032

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2823154Full LengthBC001643tumor necrosis factor, alpha-induced protein 1 (endothelial)
2823154Full LengthBC001949tumor necrosis factor, alpha-induced protein 1 (endothelial)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_066960  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021137 NP_066960 Q13829 K_tetra

Related Sequences

 
mRNAGenPeptSwissProt
M80783 AAA58385 Q13829
BC001643 AAH01643 Q13829
BC001949 AAH01949 Q13829
BT020121 AAV38924 Q13829
DQ892758 ABM83684  
DQ896003 ABM86981  
AK312387 BAG35304 Q13829
AK300584 BAH13310 B7Z6M4
CR456819 CAG33100 Q13829

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TNFAIP1 NP_066960 M.musculus Tnfaip1 21927 Gene Info NP_001152864 97
R.norvegicus Tnfaip1 287543   NP_891995 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)