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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. GPM6A, glycoprotein M6A
Sequence ID:NM_001261447
NM_001261448
NM_005277
NM_201591
NM_201592
NR_048571
Entrez Gene ID:2823
Ensembl ID:ENSG00000150625

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:4q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 176554597 - 176923534

 Exon Info From UCSC:
NM_005277
NM_201591
NM_201592

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4798738Full LengthBC022508glycoprotein M6A
4799752Full LengthBC022528glycoprotein M6A
5259851Full LengthBC044612glycoprotein M6A
5262426IncompleteBC032904glycoprotein M6A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005268  NP_963885  NP_963886  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001261447 NP_001248376    
NM_001261448 NP_001248377    
NM_005277 NP_005268 P51674 Myelin_PLP
NM_201591 NP_963885 P51674 Myelin_PLP
NM_201592 NP_963886   Myelin_PLP

Related Sequences

 
mRNAGenPeptSwissProt
U45956 AAB16889 P51674
BC022508 AAH22508 P51674
BC022528 AAH22528 P51674
BC037853 AAH37853 Q49AH3
BC044612 AAH44612 Q86YB0
DQ892372 ABM83298  
DQ895581 ABM86507  
D49958 BAA08712 P51674
AK299788 BAH13128 B7Z642

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens GPM6A NP_005268 R.norvegicus Gpm6a 306439   NP_835206 100
M.musculus Gpm6a 234267 Gene Info NP_705809 99
D.melanogaster M6 40383   NP_730642 32
A.gambiae AgaP_AGAP012018 1280652   XP_320513 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)