Skip Navigation
NCI banner National Cancer Institute U.S. National Institutes of Health National Cancer Institute
Genes
  • Gene Tools
Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CCL20, chemokine (C-C motif) ligand 20
Sequence ID:NM_001130046
NM_004591
Entrez Gene ID:6364
Ensembl ID:ENSG00000115009

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:2q36.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 228678557 - 228682270

 Exon Info From UCSC:
NM_001130046
NM_004591

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4712025Full LengthBC020698chemokine (C-C motif) ligand 20

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_004582  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001130046 NP_001123518    
NM_004591 NP_004582 P78556 IL8

Related Sequences

 
mRNAGenPeptSwissProt
U64197 AAB61534 P78556
U77035 AAC50943 P78556
BC020698 AAH20698 P78556
DQ891973 ABM82899  
DQ896841 ABM87840  
D86955 BAA13191 P78556

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CCL20 NP_004582 M.musculus Ccl20 20297 Gene Info NP_058656 64
R.norvegicus Ccl20 29538   NP_062106 62

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)