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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. TUBA4A, tubulin, alpha 4a
Sequence ID:NM_006000
RefSeqGene ID:NG_029913
Entrez Gene ID:7277
Ensembl ID:ENSG00000127824

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:2q35Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:2: 220114432 - 220118638

NM_006000 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
371081220115000220116044
10821230220116286220116434
12311453220116729220116951
14541514220118577220118637

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2820121Full LengthBC009238tubulin, alpha 4a

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005991  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006000 NP_005991 P68366 Tubulin
Tubulin_C

Related Sequences

 
mRNAGenPeptSwissProt
BC009238 AAH09238 P68366
BT006731 AAP35377 P68366
DQ893824 ABM84750  
AK054731 BAG51418 P68366
AK299958 BAH13182 A8MUB1

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TUBA4A NP_005991 M.musculus Tuba4a 22145 Gene Info NP_033473 100
R.norvegicus Tuba4a 316531   NP_001007005 100
N.crassa NCU09132 3875052   XP_958904 71

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)

BioCarta Pathways
Pathway information courtesy of BioCarta