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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. H1FX, H1 histone family, member X
Sequence ID:NM_006026
Entrez Gene ID:8971
Ensembl ID:ENSG00000184897

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, t-cell, testis, thymus, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:3q21.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:3: 129033616 - 129035120

NM_006026 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
191524129033614129035119

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2819756Full LengthBC000426H1 histone family, member X
3538400Full LengthBC010435H1 histone family, member X

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006017  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006026 NP_006017 Q92522 Linker_histone

Related Sequences

 
mRNAGenPeptSwissProt
BC000426 AAH00426 Q92522
BC010435 AAH10435 Q92522
D64142 BAA11018 Q92522

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens H1FX NP_006017 M.musculus H1fx 243529 Gene Info NP_941024 80
R.norvegicus H1fx 500252   XP_575600 77

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)