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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PLOD1, procollagen-lysine, 2-oxoglutarate 5-dioxygenase 1
Sequence ID:NM_000302
RefSeqGene ID:NG_008159
Entrez Gene ID:5351
Ensembl ID:ENSG00000083444

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p36.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 11994781 - 12035202

 Exon Info From UCSC:
NM_000302

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3917351Full LengthBC016657procollagen-lysine 1, 2-oxoglutarate 5-dioxygenase 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_000293  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_000302 NP_000293 Q02809 EC 1.14.11.4 2OG-FeII_Oxy

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC016657 AAH16657 Q02809 EC 1.14.11.4
AK312243 BAG35176 B2R5M9  
AK294688 BAG57849 B4DGN8  
AK295254 BAG58243 B4DHT1  
AK299150 BAG61199 B4DR87  
AK316285 BAH14656 B4DR87  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PLOD1 NP_000293 R.norvegicus Plod1 116552   NP_446279 91
M.musculus Plod1 18822 Gene Info NP_035252 91

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)