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Gene Info

Gene Information For:Hs. SSR2, Signal sequence receptor, beta (translocon-associated protein beta)
Sequence ID:NM_003145
Entrez Gene ID:6746
Ensembl ID:ENSG00000163479

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1q21-q23Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 155978838 - 155990700

NM_003145 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
30631155978839155979440
632709155981600155981677
710818155984751155984859
819917155988060155988158
9181072155989803155989957
10731152155990678155990757

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2822983Full LengthBC000341signal sequence receptor, beta (translocon-associated protein beta)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003136  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003145 NP_003136 P43308 TRAP_beta

Related Sequences

 
mRNAGenPeptSwissProt
BC000341 AAH00341 P43308
AY251536 AAP20059 P43308
D37991 BAA07206 P43308
AK222600 BAD96320 P43308
AK313821 BAG36556 P43308
AK300678 BAG62361 B4DUJ9
X74104 CAA52207 P43308
BX649192 CAE46211 Q6MZE4
CR456973 CAG33254 P43308

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SSR2 NP_003136 M.musculus Ssr2 66256 Gene Info NP_079724 97
R.norvegicus Ssr2 295235   NP_001099912 97
A.gambiae AgaP_AGAP005861 1276528   XP_001688740 51
D.melanogaster SsRbeta 39768   NP_524103 49
C.elegans trap-2 180422   NP_508150 40

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)