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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CPSF7, cleavage and polyadenylation specific factor 7, 59kDa
Sequence ID:NM_001136040
NM_001142565
NM_024811
Entrez Gene ID:79869
Ensembl ID:ENSG00000149532

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:11q12.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 61178414 - 61196707

 Exon Info From UCSC:
NM_001136040
NM_001142565
NM_024811

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3913173Full LengthBC018135pre-mRNA cleavage factor I, 59 kDa subunit

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_079087  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001136040 NP_001129512 Q8N684  
NM_001142565 NP_001136037    
NM_024811 NP_079087 Q8N684 RRM_1

Related Sequences

 
mRNAGenPeptSwissProt
BC018135 AAH18135 Q8N684
EU832006 ACE86669  
EU831912 ACE87353  
AK022591 BAB14118 Q8N684
AK096343 BAG53266 Q8N684
AK294578 BAG57769 B4DGF8
AL512759 CAC21678 Q8N684
AJ275970 CAC81661 Q8N684
BX537888 CAD97884 Q8N684

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CPSF7 NP_079087 M.musculus Cpsf7 269061 Gene Info NP_758506 99
R.norvegicus Cpsf7 365407   NP_001014267 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)