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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. CAPZA1, capping protein (actin filament) muscle Z-line, alpha 1
Sequence ID:NM_006135
Entrez Gene ID:829
Ensembl ID:ENSG00000116489

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:1p13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 113213935 - 113214234

NM_006135 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1431113162074113162504
432495113189831113189894
496547113192039113192090
548611113196219113196282
612818113197086113197292
819898113201643113201722
899977113202322113202400
9781049113209695113209766
10501112113212164113212226
11132740113212613113214240

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3047937Full LengthBC000144capping protein (actin filament) muscle Z-line, alpha 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006126  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006135 NP_006126 P52907 F-actin_cap_A

Related Sequences

 
mRNAGenPeptSwissProt
U56637 AAC00533 P52907
BC000144 AAH00144 P52907
BT019364 AAV38171 P52907
DQ890754 ABM81680  
DQ893919 ABM84845  
AK223226 BAD96946 P52907
AK289654 BAF82343 A8K0T9
CR407657 CAG28585 P52907
CR541819 CAG46618 P52907

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CAPZA1 NP_006126 M.musculus Capza1 12340 Gene Info NP_033927 97
R.norvegicus Capza1 691149   NP_001103095 97
A.gambiae AgaP_AGAP006141 1276811   XP_001688794 65
D.melanogaster cpa 37387   NP_611539 65
C.elegans cap-1 177497   NP_501145 58
A.thaliana AT3G05520 819717   NP_187203 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)