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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. OPN3, opsin 3
Sequence ID:NM_014322
NM_001030011
NM_001030012
Entrez Gene ID:23596
Ensembl ID:ENSG00000054277

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:1q43Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:1: 241756914 - 241803611

Transcript StartTranscript EndChromosomal Start Chromosomal End
21542241756452241757992
15431794241761047241761298
17952114241767561241767880
21152632241803183241803700

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5723543Full LengthBC036773opsin 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_055137  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_014322 NP_055137 Q9H1Y3 7tm_1

Related Sequences

 
mRNAGenPeptSwissProt
AF140242 AAD32671 Q9H1Y3
BC036773 AAH36773 Q9H1Y3
BC062622 AAH62622 Q6P5W7
BC073872 AAH73872 Q6GMT1
AF303588 AAK37447 Q9H1Y3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens OPN3 NP_055137 R.norvegicus Opn3 498289   XP_573517 89
M.musculus Opn3 13603 Gene Info NP_034228 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)