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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. RPRD1B, regulation of nuclear pre-mRNA domain containing 1B
Sequence ID:NM_021215
Entrez Gene ID:58490
Ensembl ID:ENSG00000101413

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, placenta, pooled tissue, prostate, skin, spleen, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q11.21-q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 36694470 - 36720761

NM_021215 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
15533666194736662499
5546833666883636668965
6848173667674936676882
8189303668593336686045
93110573668779536687921
105812333669448236694657
123438703671812736720763

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5223673Full LengthBC033629regulation of nuclear pre-mRNA domain containing 1B
2967326IncompleteBC001696regulation of nuclear pre-mRNA domain containing 1B
4284339IncompleteBC020939chromosome 20 open reading frame 77

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_067038  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_021215 NP_067038 Q9NQG5 DUF618

Related Sequences

 
mRNAGenPeptSwissProt
BC001696 AAH01696 Q9NQG5
BC033629 AAH33629 Q9NQG5
DQ372938 ABD34791 Q9NQG5
AK312468 BAG35375 Q9NQG5
AL117521 CAH10720 Q69YY7

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens RPRD1B NP_067038 M.musculus Rprd1b 70470 Gene Info NP_081710 100
R.norvegicus Rprd1b 311591   NP_001092197 99
A.gambiae AgaP_AGAP005331 1276040   XP_555972 50
D.melanogaster CG9018 38283   NP_647701 50
A.thaliana AT5G10060 830870   NP_196568 32
A.thaliana AT5G65180 836642   NP_569007 32

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)