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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CASC3, Cancer susceptibility candidate 3
Sequence ID:NM_007359
Entrez Gene ID:22794
Ensembl ID:ENSG00000108349

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 38296570 - 38327133

 Exon Info From UCSC:
NM_007359

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5547561Full LengthBC044656cancer susceptibility candidate 3
5561860Full LengthBC050526cancer susceptibility candidate 3
4823594IncompleteBC030008cancer susceptibility candidate 3

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_007359 NP_031385 O15234  

Related Sequences

 
mRNAGenPeptSwissProt
BC044656 AAH44656 O15234
BC050526 AAH50526 O15234
AK292425 BAF85114 O15234
AK296682 BAG59278 B4DKR6
X80199 CAC27699 O15234

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CASC3 NP_031385 R.norvegicus Casc3 259170   NP_671485 92
M.musculus Casc3 192160 Gene Info NP_619601 91
A.gambiae AgaP_AGAP011399 1278297   XP_317919 32
D.melanogaster btz 43331   NP_524534 31

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)