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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SEPP1, selenoprotein P, plasma, 1
Sequence ID:NM_001085486
NM_001093726
NM_005410
Entrez Gene ID:6414
Ensembl ID:ENSG00000250722

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:5q31Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:5: 42800232 - 42825998

 Exon Info From UCSC:
NM_001085486
NM_001093726
NM_005410

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4715833Full LengthBC015875selenoprotein P, plasma, 1
5770225Full LengthBC040075selenoprotein P, plasma, 1
6192976Full LengthBC046152selenoprotein P, plasma, 1
6195379Full LengthBC058919selenoprotein P, plasma, 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005401  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001085486 NP_001078955    
NM_001093726 NP_001087195    
NM_005410 NP_005401 P49908 SelP_N
SelP_C

Related Sequences

 
mRNAGenPeptSwissProt
BC015875 AAH15875 P49908
BC040075 AAH40075 P49908
BC046152 AAH46152 P49908
BC058919 AAH58919 P49908
Z11793 CAA77836 P49908

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SEPP1 NP_001078955 R.norvegicus Sepp1 29360   NP_062065 73
M.musculus Sepp1 20363 Gene Info NP_001036078 72

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)