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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SLC25A39, solute carrier family 25, member 39
Sequence ID:NM_001143780
NM_016016
Entrez Gene ID:51629
Ensembl ID:ENSG00000013306

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17q12Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 42396999 - 42400891

 Exon Info From UCSC:
NM_001143780
NM_016016

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3051436Full LengthBC001398solute carrier family 25, member 39
4126268Full LengthBC009330solute carrier family 25, member 39
6109001Full LengthBC096819solute carrier family 25, member 39
4150824IncompleteBC011178CGI-69 protein

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_057100  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001143780 NP_001137252 Q9BZJ4  
NM_016016 NP_057100   Mito_carr

Related Sequences

 
mRNAGenPeptSwissProt
AF151827 AAD34064 Q9BZJ4
AF119864 AAF69618 Q9BZJ4
AF317711 AAG60687 Q9BZJ4
BC001398 AAH01398 Q9BZJ4
BC009330 AAH09330 Q9BZJ4
BC096819 AAH96819 Q9BZJ4
AK026060 BAB15341 Q9BZJ4
AB209576 BAD92813 Q59F84
AK289357 BAF82046 Q9BZJ4
AK294085 BAG57426 B4DFG5
AK295478 BAG58405 B4DI93
AK301139 BAG62731 B4DVL9
AL133584 CAB63728 Q9BZJ4

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SLC25A39 NP_001137252 M.musculus Slc25a39 68066 Gene Info NP_080818 89
R.norvegicus Slc25a39 360636   NP_001019963 88
D.melanogaster CG2616 40915   NP_649731 49
A.thaliana MTM1 828907   NP_567790 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)