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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. USO1, USO1 vesicle docking protein homolog (yeast)
Sequence ID:NM_003715
Entrez Gene ID:8615
Ensembl ID:ENSG00000138768

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:4q21.1Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:4: 76692060 - 76731688

 Exon Info From UCSC:
NM_003715

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
5533256Full LengthBC032654USO1 homolog, vesicle docking protein (yeast)
4301168IncompleteBC006398USO1 homolog, vesicle docking protein (yeast)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_003706  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_003715 NP_003706 O60763 Uso1_p115_head
Uso1_p115_C

Related Sequences

 
mRNAGenPeptSwissProt
BC006398 AAH06398 O60763
BC032654 AAH32654 O60763
DQ894066 ABM84992  
EU176195 ABW03646  
D86326 BAA25300 O60763
AK314289 BAG36947 O60763
AL832010 CAD89917 O60763
AM392946 CAL37824  
AM393489 CAL38366  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens USO1 NP_003706 M.musculus Uso1 56041 Gene Info NP_062363 93
R.norvegicus Uso1 56042   NP_062252 92
A.gambiae AgaP_AGAP009840 1279258   XP_318953 54
D.melanogaster p115 31698   NP_572417 50
C.elegans K09B11.9 178311   NP_001040974 35
A.thaliana GC6 822375   NP_566820 31
N.crassa NCU01644 3872421   XP_956266 29

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)