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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. SCN3B, sodium channel, voltage-gated, type III, beta subunit
Sequence ID:NM_001040151
NM_018400
RefSeqGene ID:NG_016283
Entrez Gene ID:55800
Ensembl ID:ENSG00000166257

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11q23.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 123499896 - 123524955

 Exon Info From UCSC:
NM_001040151
NM_018400

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
8991981Full LengthBC126265sodium channel, voltage-gated, type III, beta
40125833Full LengthBC117282sodium channel, voltage-gated, type III, beta
5311260IncompleteBC045704sodium channel, voltage-gated, type III, beta

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060870  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001040151 NP_001035241    
NM_018400 NP_060870 Q9NY72 V-set

Related Sequences

 
mRNAGenPeptSwissProt
BC117282 AAI17283 Q9NY72
BC126265 AAI26266 Q9NY72
HQ258123 ADR82877  
AB032984 BAA86472 Q9NY72
AK314513 BAG37113 Q9NY72
AL136589 CAB66524 Q9NY72
AJ243396 CAB76825 Q9NY72
AM393297 CAL38175  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens SCN3B NP_001035241 R.norvegicus Scn3b 245956   NP_620797 98
M.musculus Scn3b 235281 Gene Info NP_839941 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)