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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. ATP9A, ATPase, class II, type 9A
Sequence ID:NM_006045
Entrez Gene ID:10079
Ensembl ID:ENSG00000054793

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, retina, skin, stem cell, stomach, synovium, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:20q13.2Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:20: 50213316 - 50384867

 Exon Info From UCSC:
NM_006045

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
100068209Full LengthBC167819ATPase, class II, type 9A
4549698IncompleteBC016044ATPase, class II, type 9A
5577438IncompleteBC036759ATPase, Class II, type 9A
40027528IncompleteBC110591ATPase, class II, type 9A
40027531IncompleteBC110592ATPase, class II, type 9A

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_006036  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_006045 NP_006036 O75110 EC 3.6.3.1 Hydrolase

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC016044 AAH16044 Q96B35  
BC110591 AAI10592 Q2NLD0  
BC110592 AAI10593 Q2NLD0  
BC167819 AAI67819    
AB014511 BAA31586 O75110 EC 3.6.3.1
AK172802 BAD18775 O75110 EC 3.6.3.1
AK299064 BAG61130 B4DR18  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens ATP9A NP_006036 M.musculus Atp9a 11981 Gene Info NP_056546 98

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)