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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PPP4R1, protein phosphatase 4, regulatory subunit 1
Sequence ID:NM_001042388
NM_005134
NR_052003
Entrez Gene ID:9989
Ensembl ID:ENSG00000154845

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:18p11.22Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:18: 9546791 - 9563411

 Exon Info From UCSC:
NM_001042388
NM_005134

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
30342594Full LengthBC060829protein phosphatase 4, regulatory subunit 1

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_005125  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001042388 NP_001035847 Q8TF05  
NM_005134 NP_005125   HEAT

Related Sequences

 
mRNAGenPeptSwissProt
U79267 AAB50211 Q8TF05
AF111106 AAD09818 Q8TF05
AF100744 AAD43008 Q8TF05
BC060829 AAH60829 Q8TF05
AF200478 AAL78298 Q8TF05
AY486333 AAS59409 Q6RXQ6
AK292538 BAF85227 A8K923
AK315106 BAG37566 B2RCG9
AK293869 BAG57259 B4DEZ8
AK295533 BAG58445 B4DID3

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PPP4R1 NP_001035847 R.norvegicus Ppp4r1 140943   NP_543183 87
M.musculus Ppp4r1 70351 Gene Info NP_666193 87
C.elegans ppfr-1 172761   NP_001122456 33

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)