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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. LDLRAD3, Low density lipoprotein receptor class A domain containing 3
Sequence ID:NM_174902
Entrez Gene ID:143458
Ensembl ID:ENSG00000179241

Database Links

UniGeneEntrez GeneEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data


Cytogenetic Location (from UniGene)

Cytogenetic Location:11p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:11: 35965611 - 36252841

NM_174902 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
1833596561135965693
842303605765236057798
2313563610320236103327
3574913611987636120010
4928373624863436248979
83829693625070936252840

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4828259Full LengthBC042754low density lipoprotein receptor class A domain containing 3
9020273Full LengthBC136286low density lipoprotein receptor class A domain containing 3
9052339Full LengthBC143824low density lipoprotein receptor class A domain containing 3

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_777562  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_174902 NP_777562 Q86YD5 Ldl_recept_a

Related Sequences

 
mRNAGenPeptSwissProt
BC042754 AAH42754 Q86YD5
BC136286 AAI36287 Q86YD5
BC143824 AAI43825 B7Z1U3
AK075546 BAC11689 Q86YD5
AK293930 BAH11629 B7Z1U3
AK299186 BAH12964 B7Z5M8

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens LDLRAD3 NP_777562 M.musculus Ldlrad3 241576 Gene Info NP_849217 96
R.norvegicus Ldlrad3 366138   XP_345407 96

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)