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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. TMED10, transmembrane emp24-like trafficking protein 10 (yeast)
Sequence ID:NM_006827
Entrez Gene ID:10972
Ensembl ID:ENSG00000170348

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer AberrationsRNAi

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, ear, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, retina, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus, vascular
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:14q24.3Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:14: 75600957 - 75643293

NM_006827 exon info from UCSC:

Transcript StartTranscript EndChromosomal Start Chromosomal End
2035587559817075601708
355936857560246275602588
368637597561436675614439
376038717561873475618845
387241637564305775643348

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
2959718Full LengthBC001496transmembrane emp24-like trafficking protein 10 (yeast)
2959718Full LengthBC001825transmembrane emp24-like trafficking protein 10 (yeast)

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_006827 NP_006818 P49755  

Related Sequences

 
mRNAGenPeptSwissProt
L40397 AAC42003 P49755
BC001496 AAH01496 P49755
BC001825 AAH01825 P49755
JF432606 ADZ15823  
AK222972 BAD96692 Q53GF9
AK312384 BAG35302 P49755
AK296800 BAG59374 B4DL12
AK302920 BAG64085 B4DZH3
AJ004913 CAA06213 P49755
X97442 CAA66071 P49755
BX248754 CAD66561 P49755
AL832012 CAD89913 P49755

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens TMED10 NP_006818 M.musculus Tmed10 68581 Gene Info NP_081051 93
R.norvegicus Tmed10 84599   NP_445919 93
M.musculus Gm4024 100042773   XP_001478849 92
D.melanogaster bai 42996   NP_651323 61
A.gambiae AgaP_AGAP001064 1278678   XP_318301 60
C.elegans F47G9.1 179567   NP_505879 58
S.cerevisiae ERV25 854997   NP_013701 41
N.crassa NCU01342 3877556   XP_961428 41
A.thaliana AT1G21900 838792   NP_173608 36
A.thaliana AT1G57620 842138   NP_176075 36
S.pombe erv25 2541782   NP_593403 36
A.thaliana AT1G09580 837485   NP_172429 36

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)