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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. PCID2, PCI domain containing 2
Sequence ID:NM_001127202
NM_001127203
NM_001258212
NM_001258213
NM_018386
Entrez Gene ID:55795
Ensembl ID:ENSG00000126226

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaDTPSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    b-cell, bone, bone marrow, brain, cartilage, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, esophagus, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pituitary gland, placenta, pooled tissue, prostate, salivary gland, skin, soft tissue, spleen, stem cell, stomach, synovium, t-cell, testis, thymus, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:13q34Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:13: 113831929 - 113862976

 Exon Info From UCSC:
NM_001127202
NM_001127203
NM_018386

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3869275Full LengthBC016614PCI domain containing 2
5266649Full LengthBC031246PCI domain containing 2

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_060856  

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001127202 NP_001120674    
NM_001127203 NP_001120675    
NM_001258212 NP_001245141    
NM_001258213 NP_001245142    
NM_018386 NP_060856 Q5JVF3 PCI

Related Sequences

 
mRNAGenPeptSwissProt
AF183426 AAG09695 Q5JVF3
BC008975 AAH08975 Q96H21
BC016614 AAH16614 Q5JVF3
BC031246 AAH31246 Q5JVF3
AK000888 BAA91407 Q5JVF3
AK001185 BAA91542 Q5JVF3
AK001302 BAA91611 Q5JVF3
AK002167 BAA92118 Q5JVF3
AK023313 BAB14521 Q5JVF3
AK024478 BAB15768 Q5JVF3
AK289462 BAF82151 A8K097

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens PCID2 NP_001120674 R.norvegicus RGD1307041 361182   NP_001162615 98
M.musculus Pcid2 234069 Gene Info NP_848823 97
A.gambiae AgaP_AGAP008498 1277473   XP_316945 56
D.melanogaster PCID2 39306   NP_648486 51
C.elegans C27F2.10 175675   NP_498057 47
A.thaliana EER5 816475   NP_179546 39
S.pombe SPAC1B3.08 2542528   NP_594792 35
N.crassa NCU08388 3880084   XP_963935 35

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)