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Cancer Genome Characterization Initiative

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Gene Info

Gene Information For:Hs. -, Transcribed locus, strongly similar to NP_059052.1 hippocalcin-like protein 1 [Rattus norvegicus]
Sequence ID:BF206502
Entrez Gene ID:3241
Ensembl ID:ENSG00000115756

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssemblies

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    bone marrow, brain, cerebellum, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymphoreticular, mammary gland, nervous, ovary, pancreas, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, salivary gland, skin, spleen, stem cell, stomach, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:Unknown

Chromosomal Position (from UCSC)

Chromosomal Position:Unknown


Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
3504942Full LengthBC017482hippocalcin-like 1
3902811Full LengthBC017028hippocalcin-like 1
4100091Full LengthBC009846hippocalcin-like 1

Protein Infomation

RefSeq
mRNAProteinSwissProtPfam
NM_001258357 NP_001245286    
NM_001258358 NP_001245287    
NM_001258359 NP_001245288    
NM_002149 NP_002140 Q6FGY1
P37235
efhand
NM_134421 NP_602293 Q6FGY1
P37235
efhand

Related Sequences

 
mRNAGenPeptSwissProt
AF070616 AAC25387 O75544
BC009846 AAH09846 Q6FGY1
P37235
BC017028 AAH17028 Q6FGY1
P37235
BC017482 AAH17482 Q6FGY1
P37235
BT009835 AAP88837 Q6FGY1
P37235
D16227 BAA03754 P37235
AK292280 BAF84969 Q6FGY1
CR541975 CAG46773 Q6FGY1
P37235
CR749837 CAH18693 Q68CP5
AM392553 CAL37431  
AM392593 CAL37471  
AM392709 CAL37587  
AM392928 CAL37806  
AM393302 CAL38180  
AM393388 CAL38266  

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens HPCAL1 NP_002140 M.musculus Hpcal1 53602 Gene Info NP_057886 98
R.norvegicus Hpcal1 50871   NP_059052 98
D.melanogaster Nca 40186   NP_001163478 89
A.gambiae AgaP_AGAP007247 1269899   XP_001687984 88

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)