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Cancer Genome Characterization Initiative

Visit the database of genomic characterization data for multiple tumor types.


Gene Info

Gene Information For:Hs. CTDNEP1, CTD nuclear envelope phosphatase 1
Sequence ID:NM_001143775
NM_015343
Entrez Gene ID:23399
Ensembl ID:ENSG00000175826

Database Links

UniGeneEntrez GeneOMIMEnsembl GeneHPRDVegaSNPSNP: GeneViewSNP: VarViewAssembliesCancer Aberrations

Gene Expression Data

  • This gene is found in these cDNA libraries from the following tissue types:
    adrenal cortex, b-cell, bone, bone marrow, brain, cartilage, cerebrum, cervix, colon, embryonic tissue, endocrine, eye, fetus, gastrointestinal tract, heart, kidney, liver, lung, lymph node, lymphoreticular, mammary gland, muscle, nervous, ovary, pancreas, pancreatic islet, parathyroid, peripheral nervous system, pineal gland, placenta, pooled tissue, prostate, retina, salivary gland, skin, soft tissue, stem cell, stomach, synovium, t-cell, testis, thyroid, uncharacterized tissue, uterus
  • SAGE Anatomic Viewer
  • SAGE Digital Northern

  • Monochromatic SAGE/cDNA Virtual Northern

  • Two-dimensional array displays (similar expression pattern in NCI60 microarray data or SAGE data)

Cytogenetic Location (from UniGene)

Cytogenetic Location:17p13Mitelman Breakpoint Data

Chromosomal Position (from UCSC)

Chromosomal Position:17: 7146912 - 7154644

 Exon Info From UCSC:
NM_001143775
NM_015343

Full-Length MGC Clones for This Gene

IMAGE IdStatusAccession GenBank Def Line
4123279Full LengthBC009295dullard homolog (Xenopus laevis)

Protein Similarities Based on Shared Motif Content

Find gene products sharing protein motifs with:  NP_056158  

Protein Infomation

RefSeq
mRNAProteinSwissProtEnzymePfam
NM_001143775 NP_001137247      
NM_015343 NP_056158 O95476 EC 3.1.3.16 NIF

Related Sequences

 
mRNAGenPeptSwissProtEnzyme
BC009295 AAH09295 O95476 EC 3.1.3.16
AY364239 AAQ76798 O95476 EC 3.1.3.16
DQ893130 ABM84056    
DQ896409 ABM87408    
AJ011916 CAA09865 O95476 EC 3.1.3.16

Homologs (from HomoloGene)
Note: Both orthologs and paralogs are included.
Organism Symbol Protein Homolog Similarity
(% aa unchanged)
Organism Symbol Entrez
Gene
Gene Info Protein
H.sapiens CTDNEP1 NP_001137247 M.musculus Ctdnep1 67181 Gene Info NP_080293 100
R.norvegicus Ctdnep1 287447   XP_001080620 100
D.melanogaster l(1)G0269 33107   NP_608449 72
C.elegans scpl-2 185802   NP_495529 71
A.gambiae AgaP_AGAP006231 1276892   XP_316299 71
S.pombe SPBC3B8.10c 2541021   NP_596404 49

Gene Ontology
Gene classification by the European Bioinformatics Institute, as recorded in GOA (GO Annotation@EBI)